Stem-loop oar-mir-134

Accession

MI0016948

Description

Ovis aries oar-mir-134 precursor miRNA

Literature search

7 open access papers mention oar-mir-134
(14 sentences)

Sequence

223 reads, 36 reads per million, 13 experiments

ggugucagcaccguucagggugUGUGACUGGUUGACCAGAGGGgcaagcacuccguucacccUCUGGGCUGCCUCGUCACCAACCcucagcaccaaccgcaccugcc
(((((.......(((.(((((..(((((.(((...((((((((...(((.....)))..))))))))...)))..)))))..))))).))).......)))))....

Structure

----     cagcacc   c     gU     -U   UGA        gca   a 
    ggugu       guu agggu  GUGAC  GGU   CCAGAGGG   agc c
    |||||       ||| |||||  |||||  |||   ||||||||   ||| u
    ccacg       cga ucCCA  CACUG  CCG   GGUCUccc   uug c
ccgu     ccaacca   c     AC     CU   UCG        -ac   c 

Annotation confidence Not enough data

Genome context

chr18: 64552132-64552238 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-134

Mature oar-miR-134-5p

• Accession: MIMAT0019308
• Description: Ovis aries oar-miR-134-5p mature miRNA
• Sequence: 23 - UGUGACUGGUUGACCAGAGGG - 43
• Evidence: experimental ; Illumina [1]

Mature oar-miR-134-3p

• Accession: MIMAT0019309
• Description: Ovis aries oar-miR-134-3p mature miRNA
• Sequence: 63 - UCUGGGCUGCCUCGUCACCAACC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662