miRBase entry: oar-mir-323b

Stem-loop oar-mir-323b


Accession
MI0016951
Description
Ovis aries oar-mir-323b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention oar-mir-323b
(1 sentences)

Sequence

5 reads, 3 reads per million, 2 experiments
ccagcagugcugccucacgguacuuggagggagguuguccguggugaguuugcauugucuaaugaugCCCAAUACACGGUCGAUCUCUuuucgguaucagauugcaccgg
......((((...((...((((((.((((((((((((.(((((........(((((((...)))))))......))))).))))))))))))))))))))...))))...

Structure
ccagca    ugc  cac      u            u     gugaguuu       c 
      gugc   cu   gguacu ggagggagguug ccgug        gcauugu  
      ||||   ||   |||||| |||||||||||| |||||        ||||||| u
      cacg   ga   cuaugg cuuuUCUCUAGC GGCAC        Cguagua  
---ggc    uua  ---      -            U     --AUAACC       a 


Annotation confidence Not enough data
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Genome context
chr18: 64553587-64553696 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from oar-mir-323b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-323b

Accession MIMAT0019314
Description Ovis aries oar-miR-323b mature miRNA
Sequence 68 - CCCAAUACACGGUCGAUCUCU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662