Stem-loop oar-mir-154a

Accession

MI0016952

Description

Ovis aries oar-mir-154a precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

2 open access papers mention oar-mir-154a
(5 sentences)

Sequence

1188 reads, 350 reads per million, 13 experiments

ugcuaaucugcggaacuugaagaUAGGUUAUCCGUGUAGCCUUCGcuuuacuugugacgAAUCAUACACGGUUCACCUAUUuuuuaguaccaaaucccgccuugg
.((......))((.(((.((((((((((...(((((((...(((((.........).))))...)))))))...)))))))))).))).))..............

Structure

---ugcuaaucugc  a   u          UAU       GCC    - uuu 
              gg acu gaagaUAGGU   CCGUGUA   UUCG c   a
              || ||| ||||||||||   |||||||   |||| |   c
              cc uga uuuUUAUCCA   GGCACAU   AAgc g   u
gguuccgcccuaaa  a   u          CUU       ACU    a ugu 

Annotation confidence High

Genome context

chr18: 64556923-64557027 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-154a

Mature oar-miR-154a-5p

• Accession: MIMAT0019315
• Description: Ovis aries oar-miR-154a-5p mature miRNA
• Sequence: 24 - UAGGUUAUCCGUGUAGCCUUCG - 45
• Evidence: experimental ; Illumina [1]

Mature oar-miR-154a-3p

• Accession: MIMAT0019316
• Description: Ovis aries oar-miR-154a-3p mature miRNA
• Sequence: 60 - AAUCAUACACGGUUCACCUAUU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662