Stem-loop sequence oar-mir-412

Accession

MI0016959 (change log)

Description

Ovis aries miR-412 stem-loop

Gene family

MIPF0000192; mir-412

Literature search

1 open access papers mention oar-mir-412
(1 sentences)

Stem-loop

   agggaagaacgucaguaccagcaaccacucugg     a      a    c      u   aa    -    u 
5'                                  gguac ggacgg uggu gaccag ugg  agua auug u
                                    ||||| |||||| |||| |||||| |||  |||| ||||  
3'                                  ccaug ccuguc auca cugguc acu  ucau uaau u
   --------------------cguccgacgucac     -      g    c      c   --    g    c 

Deep sequencing

536 reads, 58.3 reads per million, 12 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr18: 64562295-64562418 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from oar-mir-412

• oar-mir-668: chr18: 64552683-64552787 [+]
• oar-mir-485: chr18: 64552826-64552936 [+]
• oar-mir-323b: chr18: 64553587-64553696 [+]
• oar-mir-154a: chr18: 64556923-64557027 [+]
• oar-mir-154b: chr18: 64557232-64557340 [+]
• oar-mir-496: chr18: 64557719-64557837 [+]
• oar-mir-377: chr18: 64559316-64559445 [+]
• oar-mir-541: chr18: 64561254-64561367 [+]
• oar-mir-3957: chr18: 64561647-64561751 [+]
• oar-mir-409: chr18: 64562168-64562268 [+]
• oar-mir-412: chr18: 64562295-64562418 [+]
• oar-mir-369: chr18: 64562459-64562565 [+]
• oar-mir-410: chr18: 64562773-64562898 [+]
• oar-mir-323c: chr18: 64563301-64563410 [+]

Database links

• miRBase Tracker:MI0016959

Mature sequence oar-miR-412-3p

• Accession: MIMAT0019329
• Sequence: 47 - uggucgaccaguuggaaaguaau - 69
• Deep sequencing: 500 reads, 12 experiments
• Evidence: experimental; Illumina [1]

Mature sequence oar-miR-412-5p

• Accession: MIMAT0019330
• Sequence: 83 - cuucaccugguccacuagcu - 102
• Deep sequencing: 32 reads, 7 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).