miRBase entry: pma-mir-17a

Stem-loop pma-mir-17a


Accession
MI0017014
Description
Petromyzon marinus pma-mir-17a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ccuggccuugcCAAAGUGCUGACAUUGCAGGUAGugacgacuuaucuuucuACUGCAGUGCAAGCACUUGUAGCugggccgu
..((((((.((..(((((((..((((((((.(((.((.((....)))).)))))))))))..)))))))...)).)))))).

Structure
cc      u  -CA       GA        G   u  c  c 
  uggccu gc   AAGUGCU  CAUUGCAG UAG ga ga u
  |||||| ||   |||||||  |||||||| ||| || ||  
  gccggg CG   UUCACGA  GUGACGUC Auc uu cu u
-u      u  AUG       AC        -   u  -  a 


Annotation confidence Not enough data
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Genome context
GL478379.1: 403379-403460 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from pma-mir-17a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-17a-5p

Accession MIMAT0019383
Description Petromyzon marinus pma-miR-17a-5p mature miRNA
Sequence 12 - CAAAGUGCUGACAUUGCAGGUAG - 34
Evidence experimental
454 [1]

Mature pma-miR-17a-3p

Accession MIMAT0019384
Description Petromyzon marinus pma-miR-17a-3p mature miRNA
Sequence 52 - ACUGCAGUGCAAGCACUUGUAGC - 74
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383