miRBase entry: pma-mir-19c

Stem-loop pma-mir-19c


Accession
MI0017021
Description
Petromyzon marinus pma-mir-19c precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

ccucugucaguuuugcagauuugcacugcgguggugccucguucccaagcUGUGCAAAUCCCCUGCAAAACUGAuggcga
.(.(((((((((((((((((((((((.((...((.((...)).))...)).)))))))))...)))))))))))))).).

Structure
c u              ---         u  ggu  u  c 
 c cugucaguuuugca   gauuugcac gc   gg gc  
 | ||||||||||||||   ||||||||| ||   || || u
 g gguAGUCAAAACGU   CUAAACGUG cg   cc ug  
a c              CCC         U  aac  u  c 


Annotation confidence Not enough data
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Genome context
GL478379.1: 404996-405075 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from pma-mir-19c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-19c

Accession MIMAT0019394
Description Petromyzon marinus pma-miR-19c mature miRNA
Sequence 51 - UGUGCAAAUCCCCUGCAAAACUGA - 74
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383