miRBase entry: pma-mir-20a

Stem-loop pma-mir-20a


Accession
MI0017022
Description
Petromyzon marinus pma-mir-20a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

cugcccacagggugcCAAAGUGCUUAUAGUGCAGGUAGuugaucuuagucuACUGCAUUUUGAGCACUUGUAGCaccagguguggaaaaac
...(((((..(((((..(((((((((.(((((((.((((((....))).)))))))))).)))))))))...)))))..))).))......

Structure
---cug  -   ag     -CA         U       G   -   a 
      cc cac  ggugc   AAGUGCUUA AGUGCAG UAG uug u
      || |||  |||||   ||||||||| ||||||| ||| |||  
      gg gug  ccaCG   UUCACGAGU UUACGUC Auc gau c
caaaaa  u   ga     AUG         U       -   u   u 


Annotation confidence Not enough data
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Genome context
GL478379.1: 406609-406699 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from pma-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-20a-5p

Accession MIMAT0019395
Description Petromyzon marinus pma-miR-20a-5p mature miRNA
Sequence 16 - CAAAGUGCUUAUAGUGCAGGUAG - 38
Evidence experimental
454 [1]

Mature pma-miR-20a-3p

Accession MIMAT0019396
Description Petromyzon marinus pma-miR-20a-3p mature miRNA
Sequence 52 - ACUGCAUUUUGAGCACUUGUAGC - 74
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383