miRBase entry: pma-mir-27a

Stem-loop pma-mir-27a


Accession
MI0017033
Description
Petromyzon marinus pma-mir-27a precursor miRNA
Gene family
MIPF0000036; mir-27


Sequence

gcagugcaggacuuaguugcuugugagcagugccuugcuuucugucuugUUCACAGUGGCUAAGUUCCACaccuc
...(((..(((((((((((((.((((((((.((..........)).)))))))))))))))))))))..)))...

Structure
gca   ca             u        u  cuug 
   gug  ggacuuaguugcu gugagcag gc    c
   |||  ||||||||||||| |||||||| ||     
   caC  CUUGAAUCGGUGA CACUUguu ug    u
cuc   AC             -        c  ucuu 


Annotation confidence Not enough data
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Genome context
GL477342.1: 30392-30466 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pma-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-27a

Accession MIMAT0019413
Description Petromyzon marinus pma-miR-27a mature miRNA
Sequence 50 - UUCACAGUGGCUAAGUUCCAC - 70
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383