miRBase entry: pma-mir-30e

Stem-loop pma-mir-30e


Accession
MI0017043
Description
Petromyzon marinus pma-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

ugcgagggugaUGUAAACAUCUCAACUGGAAGCUgugacgucaguaaggCUUUCAGUUAGGUGUUCACGUCagcacgcu
.(((..(.((((((.(((((((.(((((((((((...((....))..)))))))))))))))))).)))))).).))).

Structure
u   ag g      A       C           gug  g 
 gcg  g ugaUGU AACAUCU AACUGGAAGCU   ac u
 |||  | |||||| ||||||| |||||||||||   ||  
 cgc  c aCUGCA UUGUGGA UUGACUUUCgg   ug c
u   -a g      C       -           -aa  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pma-miR-30e-5p

Accession MIMAT0019428
Description Petromyzon marinus pma-miR-30e-5p mature miRNA
Sequence 12 - UGUAAACAUCUCAACUGGAAGCU - 34
Evidence experimental
454 [1]

Mature pma-miR-30e-3p

Accession MIMAT0019429
Description Petromyzon marinus pma-miR-30e-3p mature miRNA
Sequence 50 - CUUUCAGUUAGGUGUUCACGUC - 71
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383