miRBase entry: pma-mir-125

Stem-loop pma-mir-125


Accession
MI0017058
Description
Petromyzon marinus pma-mir-125 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

cgagccuuuugcgcgaUCCCUGAGACCCUAACUUGUGAguugguugcccugucACUGGUUAGGCUCUUGGGAACcgugcagaauggcaaa
...((((((((((((.((((.((((.(((((((.((((...((....))..)))).))))))).))))))))..))))))))).)))...

Structure
cga   -         -a    U    C       U    guu  u 
   gcc uuuugcgcg  UCCC GAGA CCUAACU GUGA   gg u
   ||| |||||||||  |||| |||| ||||||| ||||   ||  
   cgg aagacgugc  AGGG UUCU GGAUUGG CAcu   cc g
aaa   u         CA    -    C       U    -gu  c 


Annotation confidence Not enough data
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Genome context
GL476441.1: 175523-175612 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pma-mir-125
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-125-5p

Accession MIMAT0019446
Description Petromyzon marinus pma-miR-125-5p mature miRNA
Sequence 17 - UCCCUGAGACCCUAACUUGUGA - 38
Evidence experimental
454 [1]

Mature pma-miR-125-3p

Accession MIMAT0019447
Description Petromyzon marinus pma-miR-125-3p mature miRNA
Sequence 54 - ACUGGUUAGGCUCUUGGGAAC - 74
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383