miRBase entry: pma-mir-196b

Stem-loop pma-mir-196b


Accession
MI0017100
Description
Petromyzon marinus pma-mir-196b precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

ucacguggugUAGGUAGUAUCAUGUUGUUGGGuauuuacaacauccucgacaacgcgucacugccuucaccacgcca
...(((((((.(((((((..(.((((((((((.............)))))))))).)..))))))).)))))))...

Structure
uca       U       AU A          uauuu 
   cguggug AGGUAGU  C UGUUGUUGGG     a
   ||||||| |||||||  | ||||||||||     c
   gcaccac uccguca  g gcaacagcuc     a
acc       u       cu c          cuaca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pma-miR-196b

Accession MIMAT0019504
Description Petromyzon marinus pma-miR-196b mature miRNA
Sequence 11 - UAGGUAGUAUCAUGUUGUUGGG - 32
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383