miRBase entry: pma-mir-217a

Stem-loop pma-mir-217a


Accession
MI0017114
Description
Petromyzon marinus pma-mir-217a precursor miRNA
Gene family
MIPF0000077; mir-217


Sequence

uguuguggaUACUGCAUCAGGAACUGAUUGGAuagugauggauugccaucaguucuuaaugcauugucu
......(((((.(((((.((((((((((.((.((((.....)))))))))))))))).))))).)))))

Structure
uguugu     C     C          U  A    g 
      ggaUA UGCAU AGGAACUGAU GG uagu a
      ||||| ||||| |||||||||| || |||| u
      ucugu acgua uucuugacua cc guua g
------     u     a          -  -    g 


Annotation confidence Not enough data
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Genome context
GL476438.1: 660387-660455 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pma-mir-217a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-217a

Accession MIMAT0019528
Description Petromyzon marinus pma-miR-217a mature miRNA
Sequence 10 - UACUGCAUCAGGAACUGAUUGGA - 32
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383