miRBase entry: pma-mir-218b

Stem-loop pma-mir-218b


Accession
MI0017117
Description
Petromyzon marinus pma-mir-218b precursor miRNA
Gene family
MIPF0000026; mir-218


Sequence

cgcgcgguuuuccgUUGUGCUUGAUCUAACCAUGCGauggggagcuacgguaacaccaugguucugucaagcaccacgggacgccgcaca
.(.(((((.((((((.(((((((((..(((((((.(.((....((....))..))))))))))..))))))))).)))))).))))).).

Structure
c c     u      U         CU       C a  ggga  u 
 g gcggu uuccgU GUGCUUGAU  AACCAUG G ug    gc a
 | ||||| |||||| |||||||||  ||||||| | ||    ||  
 c cgccg agggca cacgaacug  uugguac c ac    ug c
a a     c      c         uc       - -  --aa  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pma-miR-218b

Accession MIMAT0019531
Description Petromyzon marinus pma-miR-218b mature miRNA
Sequence 15 - UUGUGCUUGAUCUAACCAUGCG - 36
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383