miRBase entry: pma-mir-375a

Stem-loop pma-mir-375a


Accession
MI0017127
Description
Petromyzon marinus pma-mir-375a precursor miRNA
Gene family
MIPF0000114; mir-375


Sequence

acgccucgucugcgucACGCCGAGCCCGACGCGCAAUGCUggccgccgcugugcgcgcUUUGUUCGUUCGGCUCGCGUUAcgcaggcggggggc
.(.((((((((((((.((((.(((((.((((.((((.((..(((((....))).)))).)))).)))).))))))))).)))))))))))).).

Structure
a g            c    C     C    C    U  Ug  -   c 
 c ccucgucugcgu ACGC GAGCC GACG GCAA GC  gc cgc g
 | |||||||||||| |||| ||||| |||| |||| ||  || |||  
 g ggggcggacgcA UGCG CUCGG UUGC UGUU cg  cg gug c
c g            U    -     C    U    U  --  c   u 


Annotation confidence Not enough data
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Genome context
GL476436.1: 561565-561658 [-]

Database links

Mature pma-miR-375a-5p

Accession MIMAT0019542
Description Petromyzon marinus pma-miR-375a-5p mature miRNA
Sequence 17 - ACGCCGAGCCCGACGCGCAAUGCU - 40
Evidence experimental
454 [1]

Mature pma-miR-375a-3p

Accession MIMAT0019543
Description Petromyzon marinus pma-miR-375a-3p mature miRNA
Sequence 59 - UUUGUUCGUUCGGCUCGCGUUA - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383