miRBase entry: pma-let-7a-3

Stem-loop pma-let-7a-3


Accession
MI0017146
Description
Petromyzon marinus pma-let-7a-3 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

gcgugggaUGAGGUAGUAGGUUGUAUAGUUuggggagugugaccccguucaggagauaacuguacaaucuacugucuugcccaagc
((.((((.(((((((((((((((((((((((((((.......)))))..........)))))))))))))))))))))))))).))

Structure
  g    a                      ----------     ag 
gc uggg UGAGGUAGUAGGUUGUAUAGUU          ugggg  u
|| |||| ||||||||||||||||||||||          |||||  g
cg accc guucugucaucuaacaugucaa          gcccc  u
  a    -                      uagaggacuu     ag 


Annotation confidence Not enough data
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Genome context
GL476357.1: 309640-309725 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pma-let-7a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-let-7a

Accession MIMAT0019564
Description Petromyzon marinus pma-let-7a mature miRNA
Sequence 9 - UGAGGUAGUAGGUUGUAUAGUU - 30
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383