miRBase entry: pma-mir-4599a

Stem-loop pma-mir-4599a


Accession
MI0017209
Description
Petromyzon marinus pma-mir-4599a precursor miRNA
Gene family
MIPF0001252; mir-4599


Sequence

uaagcugagcCAGCCGCCCGCCACAAUCCCGgucaaguccuauugaccggagauuguccagugguggcuaagagcagugac
...((((..(.((((((((...((((((((((((((......)))))))).))))))...).)))))))..)..))))...

Structure
uaa    ag -C       - GCC      -        gu 
   gcug  c  AGCCGCC C   ACAAUC CCGgucaa  c
   ||||  |  ||||||| |   |||||| ||||||||   
   ugac  g  ucggugg g   uguuag ggccaguu  c
cag    ga aa       u acc      a        au 


Annotation confidence Not enough data
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Genome context
GL477453.1: 341342-341422 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pma-mir-4599a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-4599a

Accession MIMAT0019632
Description Petromyzon marinus pma-miR-4599a mature miRNA
Sequence 11 - CAGCCGCCCGCCACAAUCCCG - 31
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383