miRBase entry: pma-mir-4599b

Stem-loop pma-mir-4599b


Accession
MI0017210
Description
Petromyzon marinus pma-mir-4599b precursor miRNA
Gene family
MIPF0001252; mir-4599


Sequence

cguguugagGUAGCCGCCCGCCACAGUCACAgucucacacccuuugacuggcgauuguccagugguggcuaagaucaauguc
...(((((..(((((((((...((((((.(((((...........)))))..))))))...).))))))))...)))))...

Structure
cgu     -gG        - GCC      -A     ucac 
   guuga   UAGCCGCC C   ACAGUC  CAguc    a
   |||||   |||||||| |   ||||||  |||||    c
   uaacu   aucggugg g   uguuag  gucag    c
cug     aga        u acc      cg     uuuc 


Annotation confidence Not enough data
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Genome context
GL477453.1: 339630-339711 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pma-mir-4599b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-4599b

Accession MIMAT0019633
Description Petromyzon marinus pma-miR-4599b mature miRNA
Sequence 10 - GUAGCCGCCCGCCACAGUCACA - 31
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383