Stem-loop osa-MIR812m

Accession

MI0017247

Description

Oryza sativa osa-MIR812m precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812m
(15 sentences)

Sequence

6568 reads, 3625 reads per million, 2 experiments

agucauacguuuccgcguccaacuuugaucguccgucuuauuugaaauuuuuuuauaauuaguauuuuuguuguuaugagauaauaaaauaugaauaguacuuuacucgugacuuauguuuuuaauuuuuuuuaaaaaaaauucaaauaagACGAACGGUUAAAGUUGGACGCGGaaaacuauagcu
(((.(((..(((((((((((((((((((((((.(((((((((((((.((((((((.((..(((.........((((((((....((((.(((.....))).))))))))))))...........)))..)).)))))))).))))))))))))).)))))))))))))))))))))))..))).)))

Structure

   c   cg                       c             a        u  uu   --auuuuuguu        auaa    a   g 
agu aua  uuuccgcguccaacuuugaucgu cgucuuauuugaa uuuuuuua aa  agu           guuaugag    uaaa uau a
||| |||  ||||||||||||||||||||||| ||||||||||||| |||||||| ||  |||           ||||||||    |||| ||| a
ucg uau  aaaGGCGCAGGUUGAAAUUGGCA GCAgaauaaacuu aaaaaaau uu  uua           cagugcuc    auuu aug u
   a   ca                       A             a        u  uu   auuuuuguauu        ----    c   a 

Annotation confidence Not enough data

Genome context

Chr8: 20574659-20574845 [+]

Mature osa-miR812m

• Accession: MIMAT0019668
• Description: Oryza sativa osa-miR812m mature miRNA
• Sequence: 152 - ACGAACGGUUAAAGUUGGACGCGG - 175
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833