Stem-loop osa-MIR812m

Accession

MI0017247

Description

Oryza sativa osa-MIR812m precursor miRNA

Literature search

10 open access papers mention osa-MIR812m
(16 sentences)

Sequence

243359 reads, 1042.0 reads per million, 142 experiments

agucauacguuuccgcguccaACUUUGAUCGUCCGUCUUAUUUGAaauuuuuuuauaauuaguauuuuuguuguuaugagauaauaaaauaugaauaguacuuuacucgugacuuauguuuuuaauuuuuuuuaaaaaaaauucAAAUAAGACGAACGGUUAAAGUUGgacgcggaaaacuauagcu
(((.(((..(((((((((((((((((((((((.(((((((((((((.((((((((.((..(((.........((((((((....((((.(((.....))).))))))))))))...........)))..)).)))))))).))))))))))))).)))))))))))))))))))))))..))).)))

Structure

   c   cg                       C             a        u  uu   --auuuuuguu        auaa    a   g 
agu aua  uuuccgcguccaACUUUGAUCGU CGUCUUAUUUGAa uuuuuuua aa  agu           guuaugag    uaaa uau a
||| |||  ||||||||||||||||||||||| ||||||||||||| |||||||| ||  |||           ||||||||    |||| ||| a
ucg uau  aaaggcgcagGUUGAAAUUGGCA GCAGAAUAAAcuu aaaaaaau uu  uua           cagugcuc    auuu aug u
   a   ca                       A             a        u  uu   auuuuuguauu        ----    c   a 

Annotation confidence Medium

Genome context

8: 20574659-20574845 [+]

Mature osa-miR812m-5p

• Accession: MIMAT0056164
• Description: Oryza sativa osa-miR812m-5p mature miRNA
• Sequence: 22 - ACUUUGAUCGUCCGUCUUAUUUGA - 45
• Evidence: experimental ; unknown

Mature osa-miR812m-3p

• Accession: MIMAT0019668
• Description: Oryza sativa osa-miR812m-3p mature miRNA
• Sequence: 145 - AAAUAAGACGAACGGUUAAAGUUG - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833