Stem-loop sequence osa-MIR3979

Accession MI0017251
Description Oryza sativa miR3979 stem-loop
Stem-loop 
     u     -a      u              a     ----ugg    -u     u 
gguuu cuugg  ucucuc cucccuugaaggcu ucuca       aggu  ugaug a
||||| |||||  |||||| |||||||||||||| |||||       ||||  ||||| c
ccgaa gaacc  agagag gagggggcuuccga agagu       uccg  guuac a
     c     ga      -              a     caaagaa    uu     c
Get sequence
Deep sequencing
628 reads, 4 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr11: 19480150-19480263 [+]
intergenic

Mature sequence osa-miR3979-5p

Accession MIMAT0019673
Sequence

13 -  

ucucucucucccuugaaggc

 - 32

Get sequence
Deep sequencing 423 reads, 3 experiments
Evidence experimental; Solexa [1]

Mature sequence osa-miR3979-3p

Accession MIMAT0019674
Sequence

85 -  

cuucgggggaggagagaagc

 - 104

Get sequence
Deep sequencing 205 reads, 4 experiments
Evidence experimental; Solexa [1-3]

References

1
PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).
2
PMID:21791435 "Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)" Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q J Exp Bot. 62:4943-4954(2011).
3
PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).