Stem-loop osa-MIR3980b

Accession

MI0017253

Description

Oryza sativa osa-MIR3980b precursor miRNA

Gene family

MIPF0001268; MIR3980

Literature search

4 open access papers mention osa-MIR3980b
(8 sentences)

Sequence

211 reads, 163 reads per million, 2 experiments

gcggcgucuuccucuucuucaccuuaggagAAUCGACGGCCUCAGUCAGGGgcgccuuccccuugagcucgggagacgcguucugcuuuggcugggggcgcaggcuccggcgggcccucaucaucaccggagucagacacuucgucCUGGCCGAGGCCGUCGAUUCUccuagcgggaagaggaagacgccgc
(((((((((((((((((....((((((((((((((((((((((.(((((((((((((((..((.((((..((((......)))))))).))..)))))))).((((((((.((..........)).))))))))..........))))))).)))))))))))))))))))).)))))))))))))))))))

Structure

                 uuca  -                    A       -------------------------------------------        cc  u    uc    ga 
gcggcgucuuccucuuc    cc uuaggagAAUCGACGGCCUC GUCAGGG                                           gcgccuuc  cu gagc  ggga  c
|||||||||||||||||    || |||||||||||||||||||| |||||||                                           ||||||||  || ||||  ||||   
cgccgcagaaggagaag    gg gauccUCUUAGCUGCCGGAG CGGUCcu                                           cgcggggg  gg uucg  ucuu  g
                 ----  c                    C       gcuucacagacugaggccacuacuacucccgggcggccucgga        uc  u    --    gc 

Annotation confidence High

Genome context

Unknown

Mature osa-miR3980b-5p

• Accession: MIMAT0019677
• Description: Oryza sativa osa-miR3980b-5p mature miRNA
• Sequence: 31 - AAUCGACGGCCUCAGUCAGGG - 51
• Evidence: experimental ; Illumina [1]

Mature osa-miR3980b-3p

• Accession: MIMAT0019678
• Description: Oryza sativa osa-miR3980b-3p mature miRNA
• Sequence: 147 - CUGGCCGAGGCCGUCGAUUCU - 167
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833