Stem-loop osa-MIR812n

Accession

MI0017254

Description

Oryza sativa osa-MIR812n precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812n
(16 sentences)

Sequence

520 reads, 320 reads per million, 2 experiments

cuuAAGUGCAGCCAUGAGUUUCCGUGCccaacuuuaucguucgucuuauuugaaauuuuuuuaugauuaguauuucuauuguuauuagaugauaaaacaugaauaguacuuuaugugugacuuauguuuuuauuguuuuuaaaaaaaauucaaauaacacagacgaucaaaguugggcACGGAAAAUCAUGGCUGCACUUAAa
.((((((((((((((((.(((((((((((((((((((((((.((.(((((((((.((((((((.((.(((((..((((.......))))....(((((((((...((((.....))))...)))))))))))))).)).)))))))).))))))))).)).)))))).))))))))))))))))).)))))))))))))))).

Structure

c                G                 -      c  c         a        u  u     uuucuauuguuauuagaugau         aua    u 
 uuAAGUGCAGCCAUGA UUUCCGUGCccaacuuu aucguu gu uuauuugaa uuuuuuua ga uagua                     aaaacauga   guac u
 |||||||||||||||| ||||||||||||||||| |||||| || ||||||||| |||||||| || |||||                     |||||||||   |||| u
 AAUUCACGUCGGUACU AAAGGCAcggguugaaa uagcag ca aauaaacuu aaaaaaau uu guuau                     uuuuguauu   ugug a
a                A                 c      a  c         a        u  u     ---------------------         cag    u 

Annotation confidence Low

Genome context

Chr8: 14108082-14108284 [-]

Mature osa-miR812n-5p

• Accession: MIMAT0019679
• Description: Oryza sativa osa-miR812n-5p mature miRNA
• Sequence: 4 - AAGUGCAGCCAUGAGUUUCCGUGC - 27
• Evidence: experimental ; Illumina [1]

Mature osa-miR812n-3p

• Accession: MIMAT0019680
• Description: Oryza sativa osa-miR812n-3p mature miRNA
• Sequence: 179 - ACGGAAAAUCAUGGCUGCACUUAA - 202
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833