Stem-loop sequence hsa-mir-4638

Accession

MI0017265 (change log)

Symbol

HGNC:MIR4638

Description

Homo sapiens miR-4638 stem-loop

Literature search

1 open access papers mention hsa-mir-4638
(1 sentences)

Stem-loop

        -g        -  acaa uc   -c       
5' gacuc  gcugcggu gg    g  cgg  uccaga 
   |||||  |||||||| ||    |  |||  ||||| a
3' cuggg  cggcgccg cc    c  gcc  aggucc 
        ga        g  --ga uc   ac       

Deep sequencing

170 reads, 1.82 reads per million, 55 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 181222566-181222633 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR4638
• HGNC:MIR4638
• RNAcentral:URS000075F002_9606
• miRBase Tracker:MI0017265

Mature sequence hsa-miR-4638-5p

• Accession: MIMAT0019695
• Sequence: 2 - acucggcugcgguggacaagu - 22
• Deep sequencing: 45 reads, 25 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4638-5p
  • TargetScanVert:hsa-miR-4638-5p
  • miRDB:hsa-miR-4638-5p

Mature sequence hsa-miR-4638-3p

• Accession: MIMAT0019696
• Sequence: 35 - ccuggacaccgcucagccggccg - 57
• Deep sequencing: 119 reads, 43 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000403BF8_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4638-3p
  • TargetScanVert:hsa-miR-4638-3p
  • miRDB:hsa-miR-4638-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).