Stem-loop sequence hsa-mir-4642

Accession

MI0017269 (change log)

Symbol

HGNC:MIR4642

Description

Homo sapiens miR-4642 stem-loop

Stem-loop

            a          cc   -      --     cua 
5' cacaacugc uggcaucguc  cug guggcu  guggc   g
   ||||||||| ||||||||||  ||| ||||||  |||||   g
3' guguugacg accguaguag  gac caccga  caccg   g
            -          -u   u      aa     aac 

Deep sequencing

27 reads, 0 reads per million, 18 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr6: 44435641-44435722 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR4642
• HGNC:MIR4642
• miRBase Tracker:MI0017269

Mature sequence hsa-miR-4642

• Accession: MIMAT0019702
• Sequence: 10 - auggcaucguccccugguggcu - 31
• Deep sequencing: 20 reads, 15 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4642
  • TargetScanVert:hsa-miR-4642
  • miRDB:hsa-miR-4642

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).