Stem-loop sequence hsa-mir-4659a

Accession

MI0017287 (change log)

Symbol

HGNC:MIR4659A

Description

Homo sapiens miR-4659a stem-loop

Gene family

MIPF0001256; mir-4659

Literature search

1 open access papers mention hsa-mir-4659a
(1 sentences)

Stem-loop

          c   a c                    c   g 
5' gaaacug uga g ugccaugucuaagaagaaaa uuu g
   ||||||| ||| | |||||||||||||||||||| ||| a
3' cuuugac acu c acgguacagauucuucuuuu aaa g
          a   g a                    a   a 

Deep sequencing

202 reads, 2.7 reads per million, 74 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 6745164-6745244 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-4659a

• hsa-mir-4659a: chr8: 6745164-6745244 [+]
• hsa-mir-4659b: chr8: 6745168-6745240 [-]

Database links

• EntrezGene:MIR4659A
• HGNC:MIR4659A
• RNAcentral:URS000075E10B_9606
• miRBase Tracker:MI0017287

Mature sequence hsa-miR-4659a-5p

• Accession: MIMAT0019726
• Sequence: 14 - cugccaugucuaagaagaaaac - 35
• Deep sequencing: 27 reads, 15 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4659a-5p
  • TargetScanVert:hsa-miR-4659a-5p
  • miRDB:hsa-miR-4659a-5p

Mature sequence hsa-miR-4659a-3p

• Accession: MIMAT0019727
• Sequence: 49 - uuucuucuuagacauggcaacg - 70
• Deep sequencing: 169 reads, 62 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003003B4_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4659a-3p
  • TargetScanVert:hsa-miR-4659a-3p
  • miRDB:hsa-miR-4659a-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).