Stem-loop sequence hsa-mir-4680

Accession

MI0017312 (change log)

Symbol

HGNC:MIR4680

Description

Homo sapiens miR-4680 stem-loop

Gene family

MIPF0001988; mir-4680

Literature search

1 open access papers mention hsa-mir-4680
(1 sentences)

Stem-loop

   --ua   g            c        u   a 
5'     uaa aacucuugcagu uuagaugu aua a
       ||| |||||||||||| |||||||| |||  
3'     auu uugagaauguua agucuaua uau a
   cacg   g            -        -   a 

Deep sequencing

79 reads, 0 reads per million, 46 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr10: 110898090-110898155 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR4680
• HGNC:MIR4680
• miRBase Tracker:MI0017312

Mature sequence hsa-miR-4680-5p

• Accession: MIMAT0019764
• Sequence: 5 - agaacucuugcagucuuagaugu - 27
• Deep sequencing: 31 reads, 23 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4680-5p
  • TargetScanVert:hsa-miR-4680-5p
  • miRDB:hsa-miR-4680-5p

Mature sequence hsa-miR-4680-3p

• Accession: MIMAT0019765
• Sequence: 42 - ucugaauuguaagaguuguua - 62
• Deep sequencing: 35 reads, 24 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4680-3p
  • TargetScanVert:hsa-miR-4680-3p
  • miRDB:hsa-miR-4680-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).