Stem-loop sequence hsa-mir-4701

Accession

MI0017334 (change log)

Symbol

HGNC:MIR4701

Description

Homo sapiens miR-4701 stem-loop

Literature search

1 open access papers mention hsa-mir-4701
(3 sentences)

Stem-loop

   ccu   c           - -   -    gaa 
5'    ugg caccacaccua c ccc uugu   u
      ||| ||||||||||| | ||| ||||   g
3'    acc guggugugggu g ggg aacg   u
   -ac   u           a u   u    ggc 

Deep sequencing

56 reads, 0 reads per million, 32 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr12: 48771975-48772037 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000406529 ; RP11-370I10.6-001; intron 3

  ENST00000548257 ; RP11-370I10.6-001; intron 3

Database links

• EntrezGene:MIR4701
• HGNC:MIR4701
• miRBase Tracker:MI0017334

Mature sequence hsa-miR-4701-5p

• Accession: MIMAT0019798
• Sequence: 3 - uuggccaccacaccuaccccuu - 24
• Deep sequencing: 37 reads, 26 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4701-5p
  • TargetScanVert:hsa-miR-4701-5p
  • miRDB:hsa-miR-4701-5p

Mature sequence hsa-miR-4701-3p

• Accession: MIMAT0019799
• Sequence: 39 - augggugauggguguggugu - 58
• Deep sequencing: 19 reads, 11 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4701-3p
  • TargetScanVert:hsa-miR-4701-3p
  • miRDB:hsa-miR-4701-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).