Stem-loop sequence hsa-mir-3529

Accession

MI0017351 (change log)

Symbol

HGNC:MIR3529

Description

Homo sapiens miR-3529 stem-loop

Gene family

MIPF0001261; mir-3529

Literature search

2 open access papers mention hsa-mir-3529
(5 sentences)

Stem-loop

      a     a  u       -     -       ag gc 
5' ggc ccauu gg agacugg gauuu guuguug  c  a
   ||| ||||| || ||||||| ||||| |||||||  |  g
3' ccg gguag cc ucugauc cuaaa caacaac  g  u
      g     a  u       a     a       -a aa 

Deep sequencing

39 reads, 0 reads per million, 19 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr15: 88611847-88611924 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000416155 ; NTRK3-017; intron 1

  OTTHUMT00000415275 ; NTRK3-004; intron 10

  OTTHUMT00000416153 ; NTRK3-015; intron 10

  OTTHUMT00000415277 ; NTRK3-003; intron 11

  OTTHUMT00000403049 ; NTRK3-002; intron 11

  OTTHUMT00000309066 ; NTRK3-001; intron 13

  ENST00000558306 ; NTRK3-017; intron 1

  ENST00000557856 ; NTRK3-004; intron 10

  ENST00000558676 ; NTRK3-015; intron 10

  ENST00000542733 ; NTRK3-003; intron 11

  ENST00000540489 ; NTRK3-002; intron 11

  ENST00000357724 ; NTRK3-203; intron 11

  ENST00000360948 ; NTRK3-204; intron 12

  ENST00000355254 ; NTRK3-202; intron 12

  ENST00000317501 ; NTRK3-201; intron 12

  ENST00000394480 ; NTRK3-001; intron 13

Clustered miRNAs

< 10kb from hsa-mir-3529

• hsa-mir-3529: chr15: 88611847-88611924 [-]
• hsa-mir-7-2: chr15: 88611825-88611934 [+]
• hsa-mir-1179: chr15: 88608107-88608197 [+]

Database links

• EntrezGene:MIR3529
• HGNC:MIR3529
• RNAcentral:URS000075D391_9606
• miRBase Tracker:MI0017351

Mature sequence hsa-miR-3529-5p

• Accession: MIMAT0019828
• Previous IDs: hsa-miR-3529
• Sequence: 10 - agguagacugggauuuguuguu - 31
• Deep sequencing: 29 reads, 17 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004F24A9_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3529-5p
  • TargetScanVert:hsa-miR-3529-5p
  • miRDB:hsa-miR-3529-5p

Mature sequence hsa-miR-3529-3p

• Accession: MIMAT0022741
• Sequence: 46 - aacaacaaaaucacuagucuucca - 69
• Deep sequencing: 10 reads, 7 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-3529-3p
  • TargetScanVert:hsa-miR-3529-3p
  • miRDB:hsa-miR-3529-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).