Stem-loop sequence hsa-mir-4520-2

Accession

MI0017358 (change log)

Previous IDs

hsa-mir-4520b

Symbol

HGNC:MIR4520-2

Description

Homo sapiens miR-4520-2 stem-loop

Gene family

MIPF0001272; mir-4520

Stem-loop

   -                       cu 
5'  ccugcguguuuucuguccaaauc  u
    |||||||||||||||||||||||  u
3'  ggacgcacaaaagacagguuuag  u
   u                       uc 

Deep sequencing

366 reads, 0 reads per million, 34 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr17: 6655449-6655502 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-4520-2

• hsa-mir-4520-1: chr17: 6655440-6655509 [-]
• hsa-mir-4520-2: chr17: 6655449-6655502 [+]

Database links

• EntrezGene:MIR4520B
• HGNC:MIR4520-2
• RNAcentral:URS000075E5DC_9606
• miRBase Tracker:MI0017358

Mature sequence hsa-miR-4520-5p

• Accession: MIMAT0019235
• Previous IDs: hsa-miR-4520a-5p
• Sequence: 1 - ccugcguguuuucuguccaa - 20
• Deep sequencing: 9 reads, 7 experiments
• Evidence: experimental; Illumina [1]

Mature sequence hsa-miR-4520-2-3p

• Accession: MIMAT0020300
• Previous IDs: hsa-miR-4520b-3p
• Sequence: 33 - uuuggacagaaaacacgcaggu - 54
• Deep sequencing: 363 reads, 33 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000486E88_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-4520-2-3p
  • miRDB:hsa-miR-4520-2-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).