Stem-loop sequence hsa-mir-4746

Accession

MI0017385 (change log)

Symbol

HGNC:MIR4746

Description

Homo sapiens miR-4746 stem-loop

Literature search

2 open access papers mention hsa-mir-4746
(10 sentences)

Stem-loop

      ucu   c      -      a   u  aga   a 
5' gug   gug cggucc caggag acc gc   ggc u
   |||   ||| |||||| |||||| ||| ||   ||| c
3' cac   cac gccggg guccuc ugg cg   cug g
      --u   a      c      g   -  --a   g 

Deep sequencing

513 reads, 0 reads per million, 55 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 4445978-4446048 [+]
• Overlapping transcripts:

  sense

  ENST00000579802 ; MIR4746-201; exon 1

  antisense

  OTTHUMT00000458448 ; UBXN6-005; exon 1

  OTTHUMT00000458635 ; UBXN6-006; intron 2

  OTTHUMT00000458636 ; UBXN6-009; intron 2

  OTTHUMT00000458449 ; UBXN6-004; intron 3

  OTTHUMT00000458446 ; UBXN6-003; intron 8

  OTTHUMT00000458447 ; UBXN6-002; intron 10

  OTTHUMT00000458450 ; UBXN6-001; intron 10

  ENST00000588238 ; UBXN6-005; exon 1

  ENST00000590466 ; UBXN6-006; intron 2

  ENST00000587324 ; UBXN6-009; intron 2

  ENST00000587009 ; UBXN6-004; intron 3

  ENST00000591919 ; UBXN6-003; intron 8

  ENST00000301281 ; UBXN6-002; intron 10

  ENST00000394765 ; UBXN6-001; intron 10

Database links

• EntrezGene:MIR4746
• HGNC:MIR4746
• RNAcentral:URS000075E8F3_9606
• miRBase Tracker:MI0017385

Mature sequence hsa-miR-4746-5p

• Accession: MIMAT0019880
• Sequence: 10 - ccggucccaggagaaccugcaga - 32
• Deep sequencing: 468 reads, 55 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000156390_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4746-5p
  • TargetScanVert:hsa-miR-4746-5p
  • miRDB:hsa-miR-4746-5p

Mature sequence hsa-miR-4746-3p

• Accession: MIMAT0019881
• Sequence: 44 - agcggugcuccugcgggccga - 64
• Deep sequencing: 45 reads, 9 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4746-3p
  • TargetScanVert:hsa-miR-4746-3p
  • miRDB:hsa-miR-4746-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).