Stem-loop sequence hsa-mir-499b

Accession

MI0017396 (change log)

Previous IDs

hsa-mir-499a

Symbol

HGNC:MIR499B

Description

Homo sapiens miR-499b stem-loop

Literature search

122 open access papers mention hsa-mir-499b
(727 sentences)

Stem-loop

   ggaa  a  ---ac        u        -c  gugg 
5'     gc gc     agacuugc gugauguu  ac    a
       || ||     |||||||| ||||||||  ||     
3'     cg cg     ucugaacg cacuacaa  ug    g
   ---c  c  acaau        u        au  agga 

Deep sequencing

418 reads, 6.45 reads per million, 31 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr20: 34990400-34990472 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000079023 ; DLGAP4-005; intron 1

  ENST00000373913 ; DLGAP4-005; intron 1

Clustered miRNAs

< 10kb from hsa-mir-499b

• hsa-mir-499b: chr20: 34990400-34990472 [-]
• hsa-mir-499a: chr20: 34990376-34990497 [+]

Database links

• EntrezGene:MIR499A
• HGNC:MIR499B
• miRBase Tracker:MI0017396

Mature sequence hsa-miR-499b-5p

• Accession: MIMAT0019897
• Previous IDs: hsa-miR-499a-5p
• Sequence: 10 - acagacuugcugugauguuca - 30
• Deep sequencing: 91 reads, 27 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-499b-5p
  • TargetScanVert:hsa-miR-499b-5p
  • miRDB:hsa-miR-499b-5p

Mature sequence hsa-miR-499b-3p

• Accession: MIMAT0019898
• Previous IDs: hsa-miR-499a-3p
• Sequence: 46 - aacaucacugcaagucuuaaca - 67
• Deep sequencing: 327 reads, 10 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-499b-3p
  • TargetScanVert:hsa-miR-499b-3p
  • miRDB:hsa-miR-499b-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).