Stem-loop sequence hsa-mir-4783

Accession

MI0017428 (change log)

Symbol

HGNC:MIR4783

Description

Homo sapiens miR-4783 stem-loop

Stem-loop

      aa     a          -   u  c     g    cg 
5' ggg  agcgg gggcgcgccc agc cc gggcu auug  c
   |||  ||||| |||||||||| ||| || ||||| ||||   
3' ccc  ucgcc ucugcgcggg uug gg cccgg ugac  u
      cg     g          g   u  c     -    aa 

Deep sequencing

87 reads, 0 reads per million, 32 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 127423537-127423618 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000254297 ; GYPC-001; intron 1

  OTTHUMT00000330928 ; GYPC-005; intron 1

  OTTHUMT00000330925 ; GYPC-002; intron 1

  OTTHUMT00000330926 ; GYPC-003; intron 1

  ENST00000259254 ; GYPC-001; intron 1

  ENST00000459787 ; GYPC-005; intron 1

  ENST00000409836 ; GYPC-002; intron 1

  ENST00000464053 ; GYPC-003; intron 1

  ENST00000356887 ; GYPC-201; intron 1

Database links

• EntrezGene:MIR4783
• HGNC:MIR4783
• miRBase Tracker:MI0017428

Mature sequence hsa-miR-4783-5p

• Accession: MIMAT0019946
• Sequence: 13 - ggcgcgcccagcucccgggcu - 33
• Deep sequencing: 9 reads, 6 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4783-5p
  • TargetScanVert:hsa-miR-4783-5p
  • miRDB:hsa-miR-4783-5p

Mature sequence hsa-miR-4783-3p

• Accession: MIMAT0019947
• Sequence: 51 - ccccgguguuggggcgcgucugc - 73
• Deep sequencing: 75 reads, 25 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4783-3p
  • TargetScanVert:hsa-miR-4783-3p
  • miRDB:hsa-miR-4783-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).