Stem-loop sequence hsa-mir-1245b

Accession

MI0017431 (change log)

Symbol

HGNC:MIR1245B

Description

Homo sapiens miR-1245b stem-loop

Gene family

MIPF0000620; mir-1245

Literature search

5 open access papers mention hsa-mir-1245b
(46 sentences)

Stem-loop

   u    a                 -  uaaa  -  a 
5'  uuau uguaggccuuuagauca cu    ga gu u
    |||| ||||||||||||||||| ||    || || u
3'  aaua auauccggaaaucuagu ga    cu ca c
   a    c                 a  ----  a  a 

Deep sequencing

73 reads, 0 reads per million, 44 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 188978093-188978161 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000334695 ; AC068718.1-001; intron 2

  ENST00000434418 ; LINC01090-001; intron 2

Clustered miRNAs

< 10kb from hsa-mir-1245b

• hsa-mir-1245b: chr2: 188978093-188978161 [-]
• hsa-mir-1245a: chr2: 188978092-188978161 [+]

Database links

• EntrezGene:MIR1245B
• HGNC:MIR1245B
• miRBase Tracker:MI0017431

Mature sequence hsa-miR-1245b-5p

• Accession: MIMAT0019950
• Sequence: 9 - uaggccuuuagaucacuuaaa - 29
• Deep sequencing: 31 reads, 20 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-1245b-5p
  • TargetScanVert:hsa-miR-1245b-5p
  • miRDB:hsa-miR-1245b-5p

Mature sequence hsa-miR-1245b-3p

• Accession: MIMAT0019951
• Sequence: 42 - ucagaugaucuaaaggccuaua - 63
• Deep sequencing: 42 reads, 29 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-1245b-3p
  • TargetScanVert:hsa-miR-1245b-3p
  • miRDB:hsa-miR-1245b-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).