miRBase entry: tcc-MIR156a

Stem-loop tcc-MIR156a


Accession
MI0017453
Description
Theobroma cacao tcc-MIR156a precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
1 open access papers mention tcc-MIR156a
(3 sentences)

Sequence

ggggaagaucaugaccauguUGACAGAAGAGAGAGAGCACAacccggcaucagcuaaagaaagucuuugcuuuuguugggagugugcuuucucuucuucugucaccaucaucuuuucacccccu
((((..((....((..(((.(((((((((((((((((((((.(((((((..(((.(((((...))))))))..)))))))..))))))))))).)))))))))).)))..))...))..)))).

Structure
-    aa  ucau  cc   u          -           -a       uc   u     a 
 gggg  ga    ga  aug UGACAGAAGA GAGAGAGCACA  cccggca  agc aaaga  
 ||||  ||    ||  ||| |||||||||| |||||||||||  |||||||  ||| ||||| a
 cccc  cu    cu  uac acugucuucu cucuuucgugu  ggguugu  ucg uuucu  
u    ca  -uuu  ac   c          u           ga       uu   -     g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR156a

Accession MIMAT0020369
Description Theobroma cacao tcc-miR156a mature miRNA
Sequence 21 - UGACAGAAGAGAGAGAGCACA - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108