Stem-loop tcc-MIR156b

Accession

MI0017454

Description

Theobroma cacao tcc-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

ggguuuuaggguaagggaggUGACAGAAGAGAGUGAGCACacagggugcuuucuugcaugcuuggcuuucaugcuugaagcucugcgugcucacucucuaucugucauccaccucucucucucucucuc
(((....((((..(((..((((((((((((((((((((((.((((((...(((..(((((.........)))))..))))))))).))))))))))))).)))))))))..)))..))))....)))..

Structure

--   uuuu    ua   ga         -             a      gcu   uu     cuu 
  ggg    aggg  agg  ggUGACAGA AGAGAGUGAGCAC cagggu   uuc  gcaug   g
  |||    ||||  |||  ||||||||| ||||||||||||| ||||||   |||  |||||   g
  cuc    ucuc  ucc  cuacugucu ucucucacucgug gucucg   aag  cguac   c
cu   ucuc    uc   ac         a             c      ---   uu     uuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR156b

• Accession: MIMAT0020370
• Description: Theobroma cacao tcc-miR156b mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108