Stem-loop tcc-MIR156c

Accession

MI0017455

Description

Theobroma cacao tcc-MIR156c precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

gaagagggacacagagagacUGACAGAAGAGAGUGAGCACacgcaggcaauuguaugaaaagccaugccuuugcgggugcgugcucacuucucuucugucagcuucggcuuuugcauugug
.........((((..(((.(((((((((((((((((((((.(((..((((..(((((......)))))..))))..))).)))))))).))))))))))))))))..((....))..))))

Structure

gaagaggga    ----------ga   a             -        a   ag    uu     aa 
         caca            gag cUGACAGAAGAGA GUGAGCAC cgc  gcaa  guaug  a
         ||||            ||| ||||||||||||| |||||||| |||  ||||  |||||   
         gugu            uuc gacugucuucucu cacucgug gug  cguu  cguac  a
---------    uacguuuucggc   -             u        c   gg    uc     cg 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR156c

• Accession: MIMAT0020371
• Description: Theobroma cacao tcc-miR156c mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108