Stem-loop tcc-MIR160b

Accession

MI0017461

Description

Theobroma cacao tcc-MIR160b precursor miRNA

Gene family

MIPF0000032; MIR160

Sequence

uguuaaaugcacauuuuguaUGCCUGGCUCCCUGUAUGCCAuuugcaaagcccaucaagaguccgguggccuucguggauggcaugcgaggagccaugcaugcauucugcugucuuaacg
.(((((..(((((...(((((((.(((((((.((((((((((((((.(((.(((((........))))).))).)))))))))))))).))))))).)))))))...)).))).))))).

Structure

u     au   -  uuu       C       C              a   c     aag 
 guuaa  gca ca   uguaUGC UGGCUCC UGUAUGCCAuuugc aag ccauc   a
 |||||  ||| ||   ||||||| ||||||| |||||||||||||| ||| |||||    
 caauu  ugu gu   acguacg accgagg gcguacgguaggug uuc ggugg   g
g     -c   c  cuu       u       a              c   c     ccu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR160b

• Accession: MIMAT0020377
• Description: Theobroma cacao tcc-miR160b mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108