miRBase entry: tcc-MIR162

Stem-loop tcc-MIR162


Accession
MI0017463
Description
Theobroma cacao tcc-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1


Sequence

aggaaaaaggguuaaagacacuggaggcagcgguucaucgaucucuuccugggaauuuuguugugagaauaacacaaauacaugauucgaUCGAUAAACCUCUGCAUCCAGagccuuaccucucucuuuaa
.(((....((((..(((.(.(((((.((((.((((.(((((((...((.((...((((((((((....)))))).)))).)).))...))))))).)))).)))).))))).).)))))))...)))....

Structure
---a   aaaa    ua   a a     g    c    c       ucu  c  gga    -      g 
    gga    gggu  aag c cugga gcag gguu aucgauc   uc ug   auuu uguugu a
    |||    ||||  ||| | ||||| |||| |||| |||||||   || ||   |||| ||||||  
    ucu    ucca  uuc g GACCU CGUC CCAA UAGCUag   ag ac   uaaa acaaua g
aauu   -cuc    --   c a     A    U    A       cuu  u  --a    c      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR162

Accession MIMAT0020379
Description Theobroma cacao tcc-miR162 mature miRNA
Sequence 91 - UCGAUAAACCUCUGCAUCCAG - 111
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108