Stem-loop tcc-MIR164a

Accession

MI0017464

Description

Theobroma cacao tcc-MIR164a precursor miRNA

Gene family

MIPF0000045; MIR164

Sequence

ccgggugaguagcuccuuguUGGAGAAGCAGGGCACGUGCAaaauugccaauccauuuuggcuucucaaaugccaugucucgcguucugcacgugcuccccuucuccaacacggguuccucgcccuau
..(((((((.(((.((.(((((((((((..(((((((((((.....(((((......)))))......(((((........))))).)))))))))))..))))))))))).))))).)))))))...

Structure

-cc       u   u  u           CA           --------------------aaauu     uc 
   gggugag agc cc uguUGGAGAAG  GGGCACGUGCA                         gccaa  c
   ||||||| ||| || |||||||||||  |||||||||||                         |||||   
   cccgcuc uug gg acaaccucuuc  cucgugcacgu                         cgguu  a
uau       c   -  c           cc           cuugcgcucuguaccguaaacucuu     uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR164a

• Accession: MIMAT0020380
• Description: Theobroma cacao tcc-miR164a mature miRNA
• Sequence: 21 - UGGAGAAGCAGGGCACGUGCA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108