Stem-loop tcc-MIR164b

Accession

MI0017465

Description

Theobroma cacao tcc-MIR164b precursor miRNA

Gene family

MIPF0000045; MIR164

Sequence

agugggugaguagcucuuguUGGAGAAGCAGGGCACGUGCAaguccuaguuuagcuaucucgaguuuaacauacucccccagugaacugugcacgugcuccccuucuccaccaugaguuccucacccuuu
...(((((((.(((((.((.((((((((..(((((((((((.....(((((((.((.....((((.......))))....))))))))))))))))))))..)))))))).)).))))).)))))))...

Structure

agu       u     u  u        CA           agucc       g  aucuc    uu 
   gggugag agcuc ug UGGAGAAG  GGGCACGUGCA     uaguuua cu     gagu  a
   ||||||| ||||| || ||||||||  |||||||||||     ||||||| ||     ||||  a
   cccacuc uugag ac accucuuc  cucgugcacgu     gucaagu ga     cuca  c
uuu       c     u  c        cc           -----       -  -cccc    ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR164b

• Accession: MIMAT0020381
• Description: Theobroma cacao tcc-miR164b mature miRNA
• Sequence: 21 - UGGAGAAGCAGGGCACGUGCA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108