miRBase entry: tcc-MIR167a

Stem-loop tcc-MIR167a


Accession
MI0017471
Description
Theobroma cacao tcc-MIR167a precursor miRNA
Gene family
MIPF0000023; MIR167_1


Sequence

gccgugcacccacuagcaguUGAAGCUGCCAGCAUGAUCUAaacuuccuucucugucgagaggauagauuggaucaugugguagcuucaccuguuguugggaucacgaaga
..((((..((((.((((((.(((((((((((.((((((((((.((..((((((....))))))..)).))))))))))))))))))))).)))))).))))..))))....

Structure
--gc    ca    c      u           G          a  uc      u 
    cgug  ccca uagcag UGAAGCUGCCA CAUGAUCUAa cu  cuucuc g
    ||||  |||| |||||| ||||||||||| |||||||||| ||  ||||||  
    gcac  gggu guuguc acuucgauggu guacuagguu ga  ggagag u
agaa    ua    u      c           -          a  ua      c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR167a

Accession MIMAT0020387
Description Theobroma cacao tcc-miR167a mature miRNA
Sequence 21 - UGAAGCUGCCAGCAUGAUCUA - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108