Stem-loop tcc-MIR168

Accession

MI0017474

Description

Theobroma cacao tcc-MIR168 precursor miRNA

Gene family

MIPF0000081; MIR168

Sequence

aguuaccggcggucucuaauUCGCUUGGUGCAGGUCGGGAAcugauuggcugcugcuccuuaauaguggauuggauuggauuuaggccagauggcgggccgugacuggaggaggcacgaauuggaucccgccuugcaucaacugaaucggagaccgcggugaggggu
..((((((.((((((((.(((((.((((((((((.(((((.((((((.(.(((..((((((..(((((((((......))))).((((........))))...)))))))))))))).)))))).))))).)))))))))).))))).)))))))))))))).....

Structure

---ag      g        a     C          U     A      g c   ug      aa    --------------------     gg 
     uuaccg cggucucu auUCG UUGGUGCAGG CGGGA cugauu g ugc  cuccuu  uagu                    ggauu  a
     |||||| |||||||| ||||| |||||||||| ||||| |||||| | |||  ||||||  ||||                    |||||   
     aguggc gccagagg uaagu aacuacguuc gcccu gguuaa c acg  gaggag  guca                    uuuag  u
ugggg      -        c     c          c     a      g -   --      --    gugccgggcgguagaccgga     gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR168

• Accession: MIMAT0020390
• Description: Theobroma cacao tcc-miR168 mature miRNA
• Sequence: 21 - UCGCUUGGUGCAGGUCGGGAA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108