Stem-loop tcc-MIR169a

Accession

MI0017475

Description

Theobroma cacao tcc-MIR169a precursor miRNA

Gene family

MIPF0000037; MIR169_2

Sequence

uaggcacagaaagugaagugCAGCCAAGGAUGACUUGCCGAuucucccucuugcauccauucaguuuugccaacaccagcaacucauauguagagacgaauuuaaaucggcagguuguccuuggcuacauguuucuuucugcuccac
..((..(((((((.((.(((.((((((((((((((((((((((.((.((((.((((......(((..(((........))))))...))))))))..)).....)))))))))))))))))))))).))).)).)))))))..))..

Structure

ua  ca       u  a   C                      ----c  -c    u    ccauuc   uu   caa 
  gg  cagaaag ga gug AGCCAAGGAUGACUUGCCGAuu     uc  cucu gcau      agu  ugc   c
  ||  ||||||| || ||| ||||||||||||||||||||||     ||  |||| ||||      |||  |||    
  cc  gucuuuc uu uac ucgguuccuguuggacggcuaa     ag  gaga ugua      uca  acg   a
ca  uc       u  g   a                      auuua  ca    -    ---uac   --   acc 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169a

• Accession: MIMAT0020391
• Description: Theobroma cacao tcc-miR169a mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108