Stem-loop tcc-MIR169e

Accession

MI0017479

Description

Theobroma cacao tcc-MIR169e precursor miRNA

Gene family

MIPF0000037; MIR169_2

Sequence

uaggcacagaaagugaagugCAGCCAAGGAUGACUUGCCGAuucuuucucuuauauccauucaguuuuaccaacacuagcaacucauauguaaagacgaauuuaaaucggcaaguuguccuuggcuacauguuucuuuuugcuccac
..((..(((((((.((.(((.((((((((((((((((((((((..(((((((((((.......(((...........))).......)))).)))).)))....)))))))))))))))))))))).))).)).)))))))..))..

Structure

ua  ca       u  a   C                      --cu   -    -    ccauuca   uuac 
  gg  cagaaag ga gug AGCCAAGGAUGACUUGCCGAuu    uuc ucuu auau       guu    c
  ||  ||||||| || ||| ||||||||||||||||||||||    ||| |||| ||||       |||    a
  cc  guuuuuc uu uac ucgguuccuguugaacggcuaa    aag agaa ugua       cga    a
ca  uc       u  g   a                      auuu   c    a    uacucaa   ucac 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169e

• Accession: MIMAT0020395
• Description: Theobroma cacao tcc-miR169e mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108