miRBase entry: tcc-MIR169g

Stem-loop tcc-MIR169g


Accession
MI0017481
Description
Theobroma cacao tcc-MIR169g precursor miRNA
Gene family
MIPF0000012; MIR169_1


Sequence

gauaaagagucuuuguuuggUAGCCAGGGAUGACUUGCCUAcggcuuuucaggugguuaauauugaugcuaugauuaugaauguaaaaccccuggcucuggucugcaggcagucaccuuggcuaugcuaacaggcucuuuucuc
((.(((((((((..(((..((((((((((.(((((.((((.(((((..(((((.((((.(((((.(((.......))).)))))..)))))))))....)).))).)))))))))))))))))))...))))))))))))))..

Structure
--  u         uu   -ug          A     U    A   -  --uu     u    -a     g   cu 
  ga aaagagucu  guu   gUAGCCAGGG UGACU GCCU cgg cu    ucagg gguu  auauu aug  a
  || |||||||||  |||   |||||||||| ||||| |||| ||| ||    ||||| ||||  ||||| |||  u
  cu uuucucgga  caa   uaucgguucc acuga cgga guc gg    ggucc ccaa  uguaa uau  g
cu  -         --   ucg          -     -    c   u  ucuc     -    aa     g   ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR169g

Accession MIMAT0020397
Description Theobroma cacao tcc-miR169g mature miRNA
Sequence 21 - UAGCCAGGGAUGACUUGCCUA - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108