miRBase entry: tcc-MIR169k

Stem-loop tcc-MIR169k


Accession
MI0017485
Description
Theobroma cacao tcc-MIR169k precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

aagagguagacaguguggugCAGCCAAGGAUGACUUGCCGGcuaaucccuaggaggcaugcauuugccuuguuucucugcuuuagauuauuccggcuaguuguccuuggcuacggugcgcugucuucuucuc
.(((((.((((((((((.((.((((((((((((((.(((((.(((((..(((((((((.((....))..)))))).))).....)))))..))))).)))))))))))))).)).)))))))))).))))).

Structure
a     u          g  C              U     -c     ---cc   -      -u  a 
 agagg agacagugug ug AGCCAAGGAUGACU GCCGG  uaauc     uag gaggca  gc u
 ||||| |||||||||| || |||||||||||||| |||||  |||||     ||| ||||||  ||  
 ucuuc ucugucgcgu gc ucgguuccuguuga cggcc  auuag     guc cuuugu  cg u
c     u          g  a              u     uu     auuuc   u      uc  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR169k

Accession MIMAT0020401
Description Theobroma cacao tcc-miR169k mature miRNA
Sequence 21 - CAGCCAAGGAUGACUUGCCGG - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108