Stem-loop tcc-MIR171a

Accession

MI0017489

Description

Theobroma cacao tcc-MIR171a precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

1 open access papers mention tcc-MIR171a
(3 sentences)

Sequence

uuaggcaccuaccuacacuagguauugacacgguucaaccucaccguaaugucaaugaacuaacucgacuuuaugguuUGAUUGAGCCGCGCCAAUAUCuugugcuuuuuaccuuaauu
.((((......))))(((.((((((((.(.((((((((.(..(((((((.(((.............))).)))))))..).)))))))).).)))))))).)))...............

Structure

uuaggcaccuaccua   u        a a        c uc       u   aauga 
               cac agguauug c cgguucaa c  accguaa guc     a
               ||| |||||||| | |||||||| |  ||||||| |||     c
               gug uCUAUAAC G GCCGAGUU G  ugguauu cag     u
uuaauuccauuuuuc   u        C C        A Uu       u   cucaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR171a

• Accession: MIMAT0020405
• Description: Theobroma cacao tcc-miR171a mature miRNA
• Sequence: 79 - UGAUUGAGCCGCGCCAAUAUC - 99
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108