miRBase entry: tcc-MIR171d

Stem-loop tcc-MIR171d


Accession
MI0017492
Description
Theobroma cacao tcc-MIR171d precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

acacaggaguuugccaucgagauauuggugcgguucaaucggagagcaucacucuaaaggguagaguucuguuauuUGAUUGAGCCGUGCCAAUAUCacguacaacugcucaugauu
...((.((((.......((.(((((((((((((((((((((((.((((..((((((.....))))))..)))).))))))))))))))))))))))).)).......)))).))...

Structure
aca  g    uugccau  a                       g    uc      a 
   ca gagu       cg gauauuggugcgguucaaucgga agca  acucua a
   || ||||       || ||||||||||||||||||||||| ||||  |||||| g
   gu cucg       gc CUAUAACCGUGCCGAGUUAGUuu uugu  ugagau g
uua  a    ucaacau  a                       a    cu      g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR171d

Accession MIMAT0020408
Description Theobroma cacao tcc-miR171d mature miRNA
Sequence 77 - UGAUUGAGCCGUGCCAAUAUC - 97
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108