Stem-loop tcc-MIR172b

Accession

MI0017498

Description

Theobroma cacao tcc-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

aucagucguuuuuugcugcugcagcauuaucaagauucauaugcaaauauaguacggcagccguggucccgguaccgcgauuguuuuuuuucagaugccauagcuuuuauuugagcaugAGAAUCUUGAUGAUGCUGCAUcggccauaaaugacuucaca
...((((((((...((((.(((((((((((((((((((.((((((((((.(((..((((..((((((......))))))................))))...)))..)))))..))))).))))))))))))))))))).))))...)))))))).....

Structure

--auc        uuu    c                   a     --     -u   -ac    --------------gc      cc 
     agucguuu   gcug ugcagcauuaucaagauuc uaugc  aaaua  agu   ggca                cguggu  c
     ||||||||   |||| ||||||||||||||||||| |||||  |||||  |||   ||||                ||||||   
     ucaguaaa   cggc ACGUCGUAGUAGUUCUAAG guacg  uuuau  ucg   ccgu                gcgcca  g
acacu        uac    U                   A     ag     uu   aua    agacuuuuuuuuguua      ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR172b

• Accession: MIMAT0020414
• Description: Theobroma cacao tcc-miR172b mature miRNA
• Sequence: 120 - AGAAUCUUGAUGAUGCUGCAU - 140
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108