Stem-loop tcc-MIR172c

Accession

MI0017499

Description

Theobroma cacao tcc-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

caaucugucaguguuugcagaugcggcaucaucaagauucacaaacuuuaguaagggcuucuuuuggaggccggggagugguaaccaaucaccuccuuuacucgaaaguuaccuuucaaaugGGAAUCUUGAUGAUGCUGCAUcagcaaacauauuggcuauu
......((((((((((((.(((((((((((((((((((((...(((((((((((((((((((...)))))))((((.(((((.....)))))))))))))))..)))))).((........))))))))))))))))))))))).))))))))..))))....

Structure

caaucu    --        a                     acaaacuuuaguaagggcuucuuuuggaggccggggagugguaaccaaucaccuccuuuacucgaaaguua  uuu 
      guca  guguuugc gaugcggcaucaucaagauuc                                                                       cc   c
      ||||  |||||||| |||||||||||||||||||||                                                                       ||    
      cggu  uacaaacg cUACGUCGUAGUAGUUCUAAG                                                                       Gg   a
--uuau    ua        a                     -----------------------------------------------------------------------  uaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR172c

• Accession: MIMAT0020415
• Description: Theobroma cacao tcc-miR172c mature miRNA
• Sequence: 123 - GGAAUCUUGAUGAUGCUGCAU - 143
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108