miRBase entry: tcc-MIR172d

Stem-loop tcc-MIR172d


Accession
MI0017500
Description
Theobroma cacao tcc-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172


Sequence

ggagcagucguuguuugcaaauguggcaucaucaagauucacaugcaacguacauauauauuuauauauauuauaugguuuuggccugAGAAUCCUGAUGAUGCUGCAUuggcaaugaauggcuagaug
.....(((((((..((((.(((((((((((((((.(((((.((.((......(((((((((......))).))))))......)).)).))))).))))))))))))))).))))..))))))).....

Structure
ggagc       gu    a               a     a  u  aacgua      -   uu 
     agucguu  uugc aauguggcaucauca gauuc ca gc      cauaua uau  a
     |||||||  |||| ||||||||||||||| ||||| || ||      |||||| |||   
     ucgguaa  aacg uUACGUCGUAGUAGU CUAAG gu cg      guauau aua  u
guaga       gu    g               C     A  c  guuuug      u   ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR172d

Accession MIMAT0020416
Description Theobroma cacao tcc-miR172d mature miRNA
Sequence 89 - AGAAUCCUGAUGAUGCUGCAU - 109
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108